changes in coxohw.f90, removed Visual Fortran comments
delete licence file, spell checking, add link to git, etc.
add testthat
add information on the sample size in print
and summary
only observations with missing values in variables mentioned in the formula are deleted.
add option clusterid
in coxphw
citation and JSS example code is updated due to JSS publication 2018
plotshape function replaced by predict.coxphw
and plot.coxphw.predict
, print.coxhpw.predict
added.
coxphw.control
with arguments iter.max, maxhs, xconv, gconv, maxstep, round.times.to, add.constant, pc, pc.time, normalize, and fp.iter is added.
coxphw
renamed argument print
into verbose
. maxit
is now renamed as iter.max
as in the survival package. Usage of * in the formula of coxphw
is now consistent to other R packages like lm. Variable names with dots and underlines also work now. offset argument was moved to formula.
plotw
function is now renamed to plot.coxphw
.
linear.predictors
in coxphw
were corrected if coxphw.control(pc = TRUE)
.
Issue with factors in coxphw
is solved.
Issue in coxph
in survival (simultaneous use of tt
and cluster
) is solved.
All fp-transformation functions are declared as internal functions.
Add concordance probability to summary.
Add functions: coef, concord, plotshape, wald.
Include data: gastric and biofeedback.
Appearance of plotw plots is slightly changed.
Input is simplified: instead of the options AHR, AHR.norobust, ARE, and PH, templates are used now.